PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00685g00012.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family AP2
Protein Properties Length: 492aa    MW: 55634.9 Da    PI: 7.2539
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00685g00012.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.33.4e-17170219155
                       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                               s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Peaxi162Scf00685g00012.1 170 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 219
                               78*******************......55************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.3E-9170219IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-13170222IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.0E-14171221IPR001471AP2/ERF domain
PROSITE profilePS5103216.41171240IPR001471AP2/ERF domain
SMARTSM003806.0E-24171231IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-6244289IPR016177DNA-binding domain
CDDcd000184.84E-12244287No hitNo description
SMARTSM003802.7E-11245293IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MWNLNDSPDQ RMEEESEEAC SSPIELDDYK GKGVGSVSNS SSSAVVIEDG NNNNNNSEDE  60
DEEEEDDEKG KKKRSIHNKL FGFSVMDPNN YRDLSESEQP VTRNFFPVDE SEMGSSTNLP  120
RSQWAGIKFY LESETRGSTV LAGNPTEIVV QQQQQQPVKK SRRGPRSRSS QYRGVTFYRR  180
TGRWESHIWD CGKQVYLGGF DTAHAAARAY DRAAIKFRGM TNLTKEEFVH VLRRQSTGFP  240
RGSSKYRGVT LHKCGRWEAR MGQFLGKKAY DKAAIKCNGK DAVTNFDRSI YENELNTTEF  300
TDNAADHNLD LSLGSSSSKE GSRELMGDNR GQNFQLDVDW RNQGSRPKLP NQIGFDTQRR  360
GGYNESETLQ LLSQTHIHSP GSLQPNINEM QRFGQFTRNG ESHMVQVFPR QFSSYQNQSP  420
SSSNVGQIGT TNARDVLSLS TSNSQEWYHP NIPPHHHIFA TAAASSGFPQ QIVRPQNWSQ  480
KTGFHHTFMR PS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU6773824e-65EU677382.1 Solanum lycopersicum APETALA2-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016482629.10.0PREDICTED: floral homeotic protein APETALA 2-like isoform X1
SwissprotP479277e-93AP2_ARATH; Floral homeotic protein APETALA 2
TrEMBLA0A097BTY80.0A0A097BTY8_TOBAC; AP2 transcription factor SlAP2c
STRINGPGSC0003DMT4000165850.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20192365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.22e-76AP2 family protein